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E-MEM: Efficient computation of Maximal Exact Matches
E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source...2732 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...lds. Science, 2017. Unless otherwise noted, all terminology below is consistent with this paper, and all references to figures and tables in this readme refer to this paper. Specific...2354 days ago
Generate interactive codon usage plots
Generate interactive codon usage plots as used at ensembl.lepbase.org. The input file format can be generated from an Ensembl database using the export_json.pl script from the easy-import pipeline. live demo2293 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...pt for analysing the mathematical distributions present in the K-mer spectra in order to determine how much content is present in each peak. This README only contains some brief deta...2016 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
...cing trials in the Mainstreaming Cancer Genetics programme. Tutorial https://github.com/andyrimmer/Platypus/blob/master/misc/README.txt2053 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at...1962 days ago