3049 days ago
Ensembl comparative genomics resources
...computes pairwise and multiple whole-genome alignments from which large-scale synte...and constrained elements are obtained. Gene alignments are used to define Ensembl P...e plots, a gene family locator and different alignment views. The Ensembl comparativ...3031 days ago
3021 days ago
2973 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...m public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a...2973 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplicatio...2973 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM...2973 days ago
YASS :: genomic similarity search tool
...format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FAST...then tries to extend them to local alignments. This genomic search tool us...exity repeats reporting of various alignment statistical parameters (mutat...2967 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous,...0). Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinformatics, 26(...2956 days ago
2947 days ago