Results for "Algorithm Development"
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DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both des...ally tiling an entire large genome. DISCOVAR variant calling is under active development and transitioning to VCF. DI...2983 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard sof...2974 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development. With devtools, developing a...2968 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a...s, MOSAIK employs a hash clustering strategy coupled with the Smith-Waterman algorithm....2951 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics...ithout the help of many people who directly or indirectly contributed to its development. Here is the acknowledgements...
2924 days ago
- Horizontal gene transfer (HGT), the transfer of genetic material between or...rchitecture. Existing HGT detection algorithms rely on a strong phylogeneti...tability (CRM). Using CRM, the algorithm assigns a confidence score ba...with additional approaches our new algorithm p...
2918 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for...ehensive. MEGAN6 offers a large range of analysis tools, and is under active development....
2885 days ago
- Faster, more accurate algorithms function prediction "GeneMANIA (Multiple Association Network Integration Algorithm)" have however been developed in recent years and are publicly available on the web, indicating the future direction of function prediction.
2857 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (h...folding. OPERA is based on an exact algorithm that is guaranteed to minimiz...including refinements to its basic algorithm (to reduce local errors, impr...ipt describing the new features and algorithms...2839 days ago
- The Sybil software package provides a primarily web-based front-end to comparative gen...e bioinformatics department at The Institute for Genomic Research (TIGR) and development continues at the J. Craig Ven...
2841 days ago
