Public Databases for Bioinformatics !
https://www.nature.com/articles/s41467-020-17155-yServer Infrastructure: File Server: dhara: Synology 3614 Storage Appliance 4 Core Xeon 108TB disk storage 10...1167 days ago
Bioinformatics software for biologists in the genomics era
The genome sequencing revolution is approaching a landmark figure of 1000 completely se...expansion of the fundamental paradigms under which biologist-friendly software tools are designed and developed to...3814 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also...1247 days ago
Encode sequencing data freely available to download and use for academic means
In Encode, regulatory elements investigated via DNA hypersensitivity assays, assays of DN...h DNA, including modified histones and transcription factors, followed by sequencing (ChIP-...3733 days ago
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Managing and Analyzing Next-Generation Sequence Data
Centralized Bioinformatics Core Facilities provide shared resources for the computation...ions of necessary components, including infrastructure upgrades, staffing, and tools for data analyses and managem...3666 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo a...ever, the construction of computational pipelines that use different software...arch software and specifically designed pipelines to build complex, reprodu...3602 days ago
Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command l...d. Here I present ten recommendations for command line software author’s tools to follow, which I believe wo...3647 days ago
Swabs to Genomes: A Comprehensive Workflow
The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking a...for research labs with access to standard molecular biology and computational tools. However, there are a wide va...3584 days ago