Rectangle Graph for Repeat Resolution in Genome Assembly
...he future we plan to integrate RGM in SPAdes. RGM can be run with other genome assemblers if they use the graph format as SPAdes files. For more details see: Nikolay Vyahhi, Son K. P...2370 days ago
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KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...distributions present in the K-mer spectra in order to determine how much content is present in each peak. This README only contains some brief details of how to install and use KAT...2032 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...it achieves two to three orders of magnitude speedup. Therefore, it is useful for pairwise ANI computation of large number of genome pairs. More details about its speed, accuracy and...2173 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...s demarcation cut-off at 95~96% and large comparison studies have demonstrated both algorithms to produce near identical reciprocal similarities. Details of the OrthoANI algorithm is...2021 days ago
ZENBU: a collaborative, omics data integration and interactive visualization system
...ry sequence alignment data which users can uploaded from BAM, BED, GFF and tab-text files. Please check our documentation wiki for details on how to use the system, or...1998 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...of elements in the aggregates and intersections, as well as additional summary statistics derived from subset or element attributes. For further details about the original technique...1973 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
...ameshifts in public database sequences and in aligning next-generation sequencing reads/contigs against a reference coding sequence. For further details about the underlying algorith...1953 days ago
DISTRUCT: a program for the graphical display of population structure
...ions enable the user to control left-to-right printing order of populations, bottom-to-top printing order of clusers, colors, and other graphical details. [Example] [Download softwar...1918 days ago