npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
npScarf (jsa.np.npscarf) is a program that scaffolds and completes draft genomes assemblies in real-time with Oxford Nanopore sequencing. The pipeline can run on a computing clu...2594 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...e rearrangements (such as inversions and reshuffling) in any of the species. It combines refine and tba tools to align either "draft" or "finished" quality sequen...2536 days ago
Mugsy: multiple whole genome alignment tool
...tion procedure for identifying collinear regions, and the segment-based progressive multiple alignment strategy from Seqan::TCoffee. Mugsy accepts draft genomes in the form of multi-...2394 days ago
MeDuSa: a multi-draft based scaffolder
MeDuSa (Multi-Draft based Scaffolder), an algorithm for genome scaffolding. MeDuSa exploits information obtained from a set of (draft or closed) genomes from relat...2327 days ago
ARCS: scaffolding genome drafts with linked reads
...the barcoding information contained in linked reads to further organize draft genomes into highly contiguou...nked read data for connecting high-quality sequences in genome assembly drafts.2306 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...isms as references to more accurately order and orient the contigs of a draft genome. In practical usage, o...require prior knowledge concerning phylogenetic relationships among the draft and reference genomes and lib...2306 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. Th...2244 days ago
EAGLER: a scaffolding tool for long reads.
...R is a scaffolding tool for long reads. The scaffolder takes as input a draft genome created by any NGS ass...reads. The long reads are used to extend the contigs present in the NGS draft and possibly join overlapping...2217 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single laptop for microb...2210 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
...ogram in a publication, please cite the following reference:Chong Chu, Xin Li, and Yufeng Wu. "GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence R...2238 days ago