2812 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...ny number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to prod...et based on OLC based assembly. All overlap parameters (Minimum Overlap Length, Identity, etc) are user-decl...2742 days ago
2707 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...dbCAN provides an explicitly defined signature domain for each and every CAZyme family along with its location in all the relevant full-length CAZyme proteins in all sequen...2581 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...reads, as existing packages were incapable of assembling the long read lengths (5-50kbp) at such high error...de novo assembly that is highly contiguous and accurate: the contig N50 length is more than ten-times greate...2397 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ins a fully integrated data filtering engine capable of selecting relevant hits with user-defined criteria (E-Value, identity, coverage, alignment length, etc.), Does not require any...2395 days ago
2383 days ago
3d-dna: 3D de novo assembly (3D DNA) pipeline
...e the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. Un...2368 days ago
Seal: SEquence ALignment evaluation suite
...reference genome from one or more FASTA files. Alternatively, generating an artificial reference genome based on input parameters (length, repeat count, repeat length, repeat variability rate). S...2362 days ago
LRCstats: Long Read Correction Statistics
...uch as machines produced by Pacific Biosciences. The reads produced by third generation sequencing technology, as the name suggests, are longer in length than reads produced by next g...2360 days ago