SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...patterns are represented with several HSV values (only value varies). The following image, illustrating the information maps between human and chimpanzee for the several chromosomes...2383 days ago
RestrictionDigest: A powerful Perl module for simulating genomic restriction digests
...ionDigest can simulate the reference genome digestion and generate comprehensive information of the simulation. It can simulate single-enzyme digestion, double-enzyme digestion and size selecti...2210 days ago
SALSA: A tool to scaffold long read assemblies with Hi-C
...C. S. (2017). Scaffolding of long read assemblies using long range contact information. BMC genomics, 18(1), 527. Link Ghurye, J., Rhie, A., Walenz, B.P., Schmitt, A., Selvaraj,...2207 days ago
2125 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...eline will run on either a haploid assembly (i.e. Canu, FALCON or FALCON-Unzip primary contigs) or on a phased-diploid assembly (i.e. FALCON-Unzip primary contigs + haplotigs...2022 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
...s frame shift. For other protein domains, LTR_FINDER calls ps_scan (from PROSITE, http://www.expasy.org/prosite/) to locate cores of important enzymes if they occur.1995 days ago
1987 days ago
DISTRUCT: a program for the graphical display of population structure
...lecular Ecology Notes 4: 137-138 (2004)] To use the UNIX versions, unzip and untar the files in an appropriate directory using gunzip filename.tar.gz; tar xvf fi...1924 days ago
1629 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
...enome assembly result, annotate mitogenome (genbank file as result), and mitogenome visualization. MitoZ is available from https://github.com/linzhi2013/MitoZ. https://academi...1619 days ago