GeneProf: analysis of high-throughput sequencing experiment
...em Requirements'). Analysis wizards make your life easy:Step-by-step workflows make it easy to analyse high-...of analysis modules, which can be combined freely into sophisticated workflows (cp. Concept 'Workflows'...2540 days ago
snakepipes: A toolkit based on snakemake and python for analysis of NGS data
snakePipes are flexible and powerful workflows built using snakemake that simplify the analysis of NGS data. DNA-mapping* ChIP-seq* RNA-seq* ATAC-seq* scRNA-seq Hi-C...1846 days ago
2041 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
...axonomy performs a quick taxonomy of your FastQ. This requires dedicated databases to be downloaded. Sequanix: GUI for snakemake workflows, a GUI for Snakemake workflows (hence Sequana pipelines as w...1588 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adap...he implementation and the deployment of complex parallel and reactive workflows on clouds and clusters. More...1580 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...tate-of-the-art open source tools for metagenomic analyses. Tools in the dahak software suite will perform various steps in metagenomic analysis workflows including data pre-processing...1531 days ago
wgd—simple command line tools for the analysis of ancient whole-genome duplications
...mmand-line tool for KS distribution construction named wgd. The wgd suite provides commonly used KS and colinearity analysis workflows together with tools for model...1426 days ago
Pandoc: The universal markup converter
Pandoc is a Haskell library for converting from one markup format to another, and a command-line tool that uses this library. Pandoc is a free and open-source document converter, widely used as a writing tool and as a basis for publishing workflows. More at https://pandoc.org/1247 days ago
The Snakemake Wrappers repository
The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from Snakemake rules and workflows. More at https://github.com/snakemake/snakemake-wrappers1034 days ago
1004 days ago