2690 days ago
1564 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...pressed as a series of genomic positions. It's main features are: Import of mapped data from mapped data (BAM/SAM/bowtie etc) Creation of data groups for visualisation and analysi...2091 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
...D-seq. First, Rainbow clusters reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top&ndas...2053 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...ne. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (CSBs) - groups of genes that are consistentl...2047 days ago
EGAD: Ultra-fast functional analysis of gene networks
...a function prediction algorithm which is fully vectorized (neighbor_voting), allowing network characterization across even thousands of functional groups to be accomplished in minutes...1997 days ago
GeneOverlap: An R package to test and visualize gene overlaps
...ation. Similary, we can perform such kind of overlapping between the gene lists of different histone modifications with that of various expression groups and establish each histone mo...1983 days ago
1978 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...n R Shiny applications. Some of the prominent features of the package are: visualizing polyploidy simultaneously on the same plot. annotating groups of elements as distinct color...1730 days ago
GEO2R: compare two or more groups of Samples
GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.1260 days ago