DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
...a number of new features and analytical methods allowing extensive DNA polymorphism analyses on large datasets. Among other features, the newly implemented methods allow for: (i) analys...2686 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...nces of different pieces of DNA. The Basic Local Alignment Search Tool (BLAST) has revolutionized the field of bioinformatics, and is currently implemented in all free and commercial bi...2517 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...n processed since its first launch in 2016. Here, we present a newly implemented background annotation engine...ols in the future. Availability and Implementation The software is implemented in Python 3 and runs in both...2404 days ago
2398 days ago
Bandage: interactive visualization of de novo genome assemblies
...one. Availability and implementation: Source code and binaries are freely available at https://github.com/rrwick/Bandage. Bandage is implemented in C++ and supported on Linux...2384 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implemented in Java) provides several utilities that can be used to evaluate align...2355 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...nst-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and...2276 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
...man genomes (as well as to a single reference genome). Based on an extension of BWT for graphs [Sirén et al. 2014], we designed and implemented a graph FM index (GFM), an or...2230 days ago
2206 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
...ontigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in min...2201 days ago