Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...metagenome assembly, taxonomic and functional classification, genome binning, and gene assignment. We aim to deliver the analytical framework as a robust and reliable containerized wo...1515 days ago
sunbeam: A robust, extensible metagenomics pipeline
Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to mana...1445 days ago
IRscope: an online program to visualize the junction sites of chloroplast genomes
eMPRess, a software program for phylogenetic tree reconciliation under the duplication-transfer-loss model that systematically addresses the problems of choosing event costs and selecting representative solutions, enabling users to make more robust inferences.1285 days ago
SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files
A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and&nbs...824 days ago
A web-based tool for sequence alignment statistics and innovative visualization
...ts. Whencompared to currently available tools, AlignStatPlot provides a robust ability to handle andvisualis...genetics software (PDF) AlignStatPlot: An R package and online tool for robust sequence alignment statistics...60 days ago