Comment on "Genome in a Bottle (GIAB) Consortium"
...increasing the diversity of germline reference samples and developing paired tumor-normal cell lines. Workshops:The consortium was initiated in a set of meetings in 2011 and 2012,...1616 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...s to compare two vertebrate genomes); (ii) it is easy to use (a unique parameter D, which is really simple to handle, needs to be set) and (iii) it provides a rich set of graphic outputs (notably a...1650 days ago
2155 days ago
Comment on "Installing Porechop on Ubuntu !"
...ed.fa Loading reads/media/urbe/MyDDrive/ONTdata/allONT/allONT.fasta1,634,477 reads loaded Looking for known adapter sets10,000 / 10,000 (100.0%) Best read Best start read end Set %ID %ID SQK-NSK007 96.6 81.8...2162 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...nd reference. [0.04] -x --mis-rate [FLOAT] Maximum error rate of mismatch within reads. [0.04] -T --read-type [STR] Specifiy the type of reads and set multiple parameters unless ov...2179 days ago
2194 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...quick and dirty of what was done: 1 Run minimap: This uses a pre-built set of defaults (the ava-pb&...> 20170918_oly_pacbio_miniasm_reads.fasta 4 Run minimap with default settings Using the default setti...2224 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...s. Value <= 0 loads the entire file. [1024] General-purpose pre-set options: -x, --preset STR Pre-set parameters to inc...If 0, value will be dynamically determined. If < 0, no limit is set. [0] -q, --reg-reduce INT Att...2348 days ago
2717 days ago
2855 days ago