“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
...mplete TE copies, including LTR-retrotransposon Retrieve corresponding TE sequences, and flanking sequences, from the local fasta files Compute summary statistics for each TE family...2177 days ago
Hawkeye: an interactive visual analytics tool for genome assemblies
...tool for genome assemblies, designed to aid in identifying and correcting assembly errors. Users can analyze all levels of an assembly along with summary statistics and assembly metri...1966 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...nables the effective representation of associated data, such as the number of elements in the aggregates and intersections, as well as additional summary statistics derived from subse...1939 days ago
FUMA GWAS: Functional Mapping and Annotation of Genome-Wide Association Studies
...UMA is a platform that can be used to annotate, prioritize, visualize and interpret GWAS results. The SNP2GENE function takes GWAS summary statistics as an input, and p...1815 days ago
jackalope: A swift, versatile phylogenomic and high-throughput sequencing simulator
...osciences (PacBio) platforms. It can either read reference genomes from FASTA files or simulate new ones. Genomic variants can be simulated using summary statistics, phylogenies, Vari...1761 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
...they fall in the same coverage bins e.g. (10-20)threshold output to indicate how many bases in each region are covered at the given thresholds.A summary of mean depths per chromosome...1647 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...a single TF in a particular neuronal subtype 4) Single cell RNAseq analysis of neurons divided by Immediate Early Gene expression levels. In summary, MAGIC is a standalone applic...1271 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...he ancestral species within the phylogenetic range of interest. All the data on extant species displayed in this browser are from Ensembl. Summary statistics of Genomicus versi...812 days ago
gfastats: The swiss army knife for genome assembly.
gfastats is a single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation. gfasta...620 days ago