Tags: data, reads, free, tree, assembly
1592 days ago
Tags: TMRCA, Calculator, evolution, tree
1230 days ago
k-mers tutorial - classification and taxonomy
DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've been enthused about using k-mer based simila...Tags: kmer, k-mer, taxonomy, classification, tree, plot, database, similarity, comparision
1026 days ago
OneZoom tree of life explorer...
An interactive map of the evolutionary links between all living things known to science. Discover your favourites, see which species are under threat, and be amazed by the diversity of life on earth.Tags: OneZoom, tree, life, explorer
583 days ago
MIKE: an ultrafast, assembly-, and alignment-free approach for phylogenetic tree construction
MIKE (MinHash-based k-mer algorithm). This algorithm is designed for the swift calculation of the Jaccard coefficient directly from raw sequencing reads and enables the construction of phylogenetic trees based on the resultant Jaccard coefficient. Simulation results highlight the superior sp...Tags: MIKE, ultrafast, assembly, alignment-free, approach, phylogenetic, tree, construction
71 days ago