Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal...ommand line to generate informative and publication quality figures. Synima is open sourc...2041 days ago
SKESA: strategic k-mer extension for scrupulous assemblies
SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced us...ame input when assembled multiple times with the same or different compute resources. Sourc...2027 days ago
Pacasus: Correction of palindromes in long reads from PacBio and Nanopore
Tool for detecting and cleaning PacBio / Nanopore long reads after whole genome amplification. Check the poster fro...the Revolutionizing Next-Generation Sequencing (2nd edition) conference in the sourc...2029 days ago
2024 days ago
SIMBA: a Genome Assembly Project Management System
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial ge...tion Sequencing (NGS) platforms quickly, easily and effectively. SIMBA also is open sourc...2011 days ago
visNetwork: an R package for network visualization, using vis.js javascript library
visNetwork is an R package for network visualization, using vis.js javascrip....org/). All remarks and bugs are welcome on github : https://github.com/datastorm-open/...1970 days ago
2001 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al....nbsp;BLASTNBLASTPBLASTXTBLASTNTBLASTXPSIBLAST Gap opening penalty:cost to open a...Supported and Suggested Values for Gap Open...2000 days ago
2000 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.com/biotite-dev/biotite). This package is simple to use especially for the beginners in progr...1993 days ago