RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
...acterial and archaeal genomes. It works by offering a standard software pipeline for identifying genomic f...ild a version of RAST that is both customizable and extensible. In this paper, we describe the RAST tool k...2978 days ago
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YASS :: genomic similarity search tool
...spaced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. An...simple, but interesting feature is that you can specify the seed pattern used in...rameterizable output filter for low complexity repeats reporting of various alig...2973 days ago
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SATSUMA : Highly sensitive whole-genome synteny alignments.
...rientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, since it will auto...2962 days ago
Hagfish - assess an assembly through creative use of coverage plots
...a analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the...structural variation in a genome re-sequencing experiment. Hagfish requires a re...end library is. Quick links: Installation,Operation, Read mappers,&nbs...2954 days ago
RCircos: an R package for Circos 2D track plots
...simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing and graphic manipulation pipelines for presenting large-sca...2955 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK ca...2954 days ago