NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively ali...to quickly and correctly align the reads, including those spanning (c...pproximate mapping locations for a read and then a banded Smith-Water...r search helps to detect and split reads...2230 days ago
2221 days ago
Porechop: tool for finding and removing adapters from Oxford Nanopore reads
Porechop is a tool for finding and removing adapters from Oxford Nanopore reads. Adapters on the ends of reads are trimmed off, and when a read has an adapter in its middle, it is treated as chimeric and chopped into separate reads...2196 days ago
2194 days ago
2189 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has...Cerulean: A hybrid assembly using high throughput short and long reads...2189 days ago
HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from the same speci...ly low identity requirement so that a long read region can be aligned to at l...mparable accuracy. The HALC corrected long reads...2186 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extension), a de novo genome asse...implements for genome assembly: PRICE uses paired-read information to iteratively in...ontigs. Initially, those contigs can be individual reads...2183 days ago
2183 days ago
2180 days ago