Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...ic, transcriptomic, metatranscriptomic, proteomic, metaproteomic shotgun and amplicon datasets from current sequencing technologies such as Sanger, 454, Illumina. These simulated d...2598 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
...dicts scores and ranking for contigs which have no related reference genome yet. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0644-72598 days ago
NovelSeq: Novel Sequence Insertion Detection
The NovelSeq framework is designed to detect novel sequence insertions using high throughput paired-end whole genome sequencing data. http://novelseq.sourceforge.net/Home Paper at https://www.ncbi.nlm.nih.gov/pubmed/203857262582 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures M...2584 days ago
Genetic-mapper: SVG Genetic Map Drawer
...ithm of odds (LOD score) can be provided. Any extra parameter will be ignored. map.tsv ID<tab>LG<tab>POS<tab>LOD 13519 12 0 0.250840894 2718 12 1.0...2573 days ago
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Perlbrew: admin-free perl installation management tool.
...ew. For all users who want to use perlbrew, a prior perlbrew init needs to be executed. The default perlbrew root directory is ~/perl5/perlbrew, which can be change...2549 days ago
RNAcon: web-server for the prediction and classification of non-coding RNAs
...rence: Panwar, B.; Arora, A. and Raghava, G.P.S. (2014) Prediction and classification of ncRNAs using structural informationBMC Genomics 2014, 15:1272544 days ago
iTOL: Interactive Tree Of Life
...phylogenetic trees. Explore your trees directly in the browser, and annotate them with various types of data. iTOL can easily visualize trees with 50'000 or more leaves. With adv...2543 days ago