1576 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file.1565 days ago
Juicebox: Visualization and analysis software for Hi-C data
Juicebox is visualization software for Hi-C data. This distribution includes the so...ons below pertain primarily to usage of command line tools and the Juicebox jar files. Juicebox can now be used to...1563 days ago
JCVI:Python utility libraries on genome assembly, annotation and comparative genomics
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics. https://github.com/tanghaibao/jcvi More at https://github.com/tanghaibao/jcvi/wiki1537 days ago
1511 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the ta...ation of the individual ORFs. CAT and BAT can be run from intermediate steps if files are formated appropriately (s...1475 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
Genobuntu is a software package containing more than...ommonly used biological software and example script files for different assembly pipeli...s have also been provided, where the example script files can be updated to suit one&rs...1475 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...on toolkit and generate publication ready images. SynVisio requires two files to run: The simplif...t by McScanX for the same input query. Optional track file in bedgraph format to annotate the gen...1463 days ago
Far Manager Commands and Links !
Far Manager is a program for managing files and archives in Windows operating systems. Far Mana...for performing most of the necessary actions: viewing files and directories; editing, copying and renaming files; and many other actions....1439 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
SVEngine (Structural Variants Engine) SVEng...takes as input reference contigs in FASTA files, variant meta distribution as specified in META files (see Manual) or specific vari...FASTQ files and aligned short reads in BAM files.1428 days ago