GenoViz: Visualization software for genomics
...and re-usable components for data visualization and data sharing in genomics. Our flagship product is Integrated Genome Browser (IGB).For more information about IGB, visit http://...1994 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...g only the read sequences and a transcriptome index that itself takes less than 10 minutes to build. Pseudoalignment of reads preserves the key information needed for quantification, an...1989 days ago
1989 days ago
LTR_Finder: an efficient program for finding full-length LTR retrotranspsons in genome sequences.
...m is used to adjust the ends of LTR pair candidates to get alignment boundaries. These boundaries are subject to re-adjustment using supporting information of TG..CA box and TSRs and re...1983 days ago
1981 days ago
1976 days ago
HumCFS: a database of fragile sites in human chromosomes
...hich impose a problem in studying these region. In order to address these issues, we develop this platform HumCFS, which provides comprehensive information about experimentally identifi...1884 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...As (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; each annotation type has its own configuration of the ‘Information Editor’. History track...1844 days ago
Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
Miropeats discovers regions of sequence similarity amongst any set of DNA sequences and then presents this similarity information graphically. Sequence similarity searching is a very ge...1758 days ago
Retrieving Taxonomic Information with R
...troduce users to the retrieval of taxonomic information with myTAI. The tax...ackage taxize. Nevertheless, taxonomic information retrieval has been customized...TAI standard and for organism specific information retrieval. Specifically, the...1755 days ago