CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and bet...ion of CHSs. Results Here we present a Java software CHSMiner that detects CHSs ba...ctive visualization of the results. We tested the software on...2412 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...r rate is similar to the raw input reads. So far miniasm is in early development stage. It has only been te...sample PacBio from the PBcR website wget -O- http://www.cbcb.umd.edu/software/PBcR/data/selfSampleData.tar.gz...2403 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with c...2403 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idi...2403 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. B...2402 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool...the Blast suite of algorithms. Relying on unique software architecture, PLAST takes ful...ot require any additional hardware, since it is a software so...2399 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a...2396 days ago
2388 days ago
Mash: fast genome and metagenome distance estimation using MinHash
Mash is normally distributed as a dependency-free binary for Linux or OSX (see h...es). This source distribution is intended for other operating systems or for development. Mash requires c++11 to build...2388 days ago
1435 days ago