RepeatModeler2: automated genomic discovery of transposable element families
...the genome annotation toolkit that will enhance the identification and study of TEs in eukaryotic genome sequences. RepeatModeler2 is available as source code or a containerized packa...1675 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
...ble via the GigaScience database GigaDB • Project name: SeQuiLa-cov • Project home page: http://biodatageeks.org/sequila/ • Source code repository: https:/...1662 days ago
Leaflet: JavaScript libraries for interactive maps
Leaflet is one of the most popular open-source JavaScript libraries for interactive maps. Features Interactive panning/zooming Compose maps using arbitrary combinations of:...1605 days ago
Juicebox: Visualization and analysis software for Hi-C data
Juicebox is visualization software for Hi-C data. This distribution includes the source code for Juicebox, Juicer Tools, and Assembly Tools. Download Juicebox here, or...1594 days ago
shinyChromosome:a GUI for the interactive creation of non-circular whole genome diagrams
...ttp://150.109.59.144:3838/shinyChromosome/, http://shinyChromosome.ncpgr.cn, and https://yimingyu.shinyapps.io/shinyChromosome for online use. The source code and manual of shinyChrom...1586 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic analyses. Tools...stallation, and execution problems typically associated with other open-source bioinformatics solutions. Thi...1546 days ago
HASLR: a hybrid assembler which uses both second and third generation sequencing reads
...he generated assemblies in terms of contiguity and accuracy are on par with the other tools on most of the samples. Availability. HASLR is an open source tool available at https://git...1521 days ago
Genobuntu: Package for Next Generation Sequencing and Genome Assembly
...tal needs. Genobuntu attempts to reduce the amount of time and energy needed to build software workstations and it can also act as a good teaching source for a class room setting.Ther...1506 days ago
SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...el plots, Hive plots, Stacked Parallel Plots and Dot plots. Users can configure the type of plots required and then choose the source and the target chromosomes th...1494 days ago
mixtureS: a novel tool for bacterial strain reconstruction from reads
...tools, mixtureS showed better performance in almost all simulated datasets and the vast majority of experimental datasets. Availability The source code and tool mixtureS is ava...1412 days ago