proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://...2355 days ago
2353 days ago
mojolicious: a next generation web framework for the Perl programming language.
...l Perl library called CGI. It was simple enough to get started without knowing much about the language and powerful enough to keep you going, learning...Powerful out of the box with RESTful routes, plugins, commands, Perl-ish templa...2348 days ago
HTTDB - Horizontally transferred transposable elements database
Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is...2337 days ago
MUMmer4: A fast and versatile genome alignment system
...ize constraints by changing the 32-bit suffix tree data structure at the core of MUMmer to a 48-bit suffix array, and that offers improved speed through parallel processing of input...2326 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge protein sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++...2279 days ago
Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 human reference ge...1581 days ago
2251 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
...callop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves this improvement through a novel algorithm that can b...2232 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...ts, developed by Don Gilbert at Indiana University, seehttp://arthropods.eugenes.org/EvidentialGene/Constr...ble. See project wiki/blog for notes. Download http://arthropods.eugenes.org/EvidentialGene/trasse...2232 days ago