SynVisio: An Interactive Multiscale Synteny Visualization Tool for McScanX.
...he results of McScanX a popular synteny and collinearity detection toolkit and generate publication ready images. SynVisio requires two files to run: The simplifie...1463 days ago
Far Manager Commands and Links !
Far Manager is a program for managing files and archives in Windows operating systems. Fa...e for performing most of the necessary actions: viewing files and directories; editing, copying and renaming files; and many other actions....1440 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
...arios. SVEngine takes as input reference contigs in FASTA files, variant meta distribution as specified in META files (see Manual) or specific vari...d short read in FASTQ files and aligned short reads in BAM files.1429 days ago
1389 days ago
G-NEST: The Gene NEighborhood Scoring Tool
The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.1345 days ago
maftools : Summarize, Analyze and Visualize MAF Files
...omatic variants are stored in the form of Mutation Annotation Format. This package attempts to summarize, analyze, annotate and visualize MAF files in an efficient manner from e...1257 days ago
CoverM: Read coverage calculator for metagenomics
...;coverm genome (help) or individual contigs coverm contig (help). Calculating coverage by read mapping, its input can either be BAM files sorted by reference, or raw r...1129 days ago
FiNGS: Filters for Next Generation Sequencing
...riant caller to remove false positives Calculates metrics based on BAM files and provides filtering not po...le by the user. It ingests and emits standard variant call format (VCF) files and will slot into existing s...1191 days ago
Pandoc: a universal document converter
If you need to convert files from one markup format into another, pandoc is your swiss-army knife. Pandoc can convert almost all formats https://pandoc.org/index.html1074 days ago
Ventoy: an open source tool to create bootable USB drive
...bootable USB drive for ISO/WIM/IMG/VHD(x)/EFI files. With ventoy, you don't need...over and over, you just need to copy the image files to the USB drive and boot it....ndows/WinPE/Linux/Unix/Vmware/Xen...) 700+ ISO files are tested.1069 days ago