Ra assembler - a de novo DNA assembler for third generation sequencing data
...l separate components that used to be run individually.This project aims to ease the usage of Ra by integrating it into a complete de novo assembly tool. Unlike other state-of-the-a...2348 days ago
CAMSA :: a tool for Comparative Analysis and Merging of Scaffold Assemblies
CAMSA – is a tool for Comparative Analysis and Merging of Scaffold Assemblies, distributed both as a standalone software package and as Python li...2347 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea of the rectangle graph approach is already included into the ...2347 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
GPOPSIM is a simulation tool for pedigree, phenotypes, and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible p...2328 days ago
HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
HGT-Finder: (i) can be used for HGT detection in both prokaryotes and eukaryotes, (ii) can report a statistical P value for each gene to indicate how lik...2327 days ago
Seal: SEquence ALignment evaluation suite
...mprehensive sequencing simulation and alignment tool evaluation suite. This softwa...error rate, and indel rate. Applying alignment tools to the genome and the reads...interface. Parsing the output of the alignment tool and calculating the number of...2341 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenat...2009 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To s...ing identifiers (one per line) or by using the gene ID search tool or with the BLAST...2315 days ago
2312 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and...e (source code in PERL) freely available at http://bat.ina.certh.gr/tools/circoletto/ Contact:ndarz@c...2304 days ago