Results for "AP"
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...preserve heterozygotes which are often collapsed by other assemblers. Its u...information in raw reads.Fermi follows the overlap-layout-consensus paradigm and...an be resumed. Here is an example:run-fermi.pl -dAPe ./fermi -p NA12878 -t16 -f18...2855 days ago
CGView - Circular Genome Viewer
...iew is useful for producing high-quality genome maps for use in publications and...raction, and more flexibility in how the genome map is rendered. To aid with easi...ncluded to provide an intuitive, user-friendly graphical user interface for custo...2845 days ago
BLAST Ring Image Generator (BRIG)
...e cross-platform (Windows/Mac/Unix) application that can display cir...handling genome assembly data. The application is available at: htt...yed for draft genomes; customized graphs and annotations can be disp...IG also accepts SAM-formatted read-mapping files enabling genomic re...2834 days ago
- Strudel is our graphical tool for visualizing genetic and physical maps of genomes for comparative purposes. The application aims to let the user examine their data at...iety of different levels of resolution, from entire maps to individual markers, and e...
2834 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map positions (chromosomal) for neutral mar...fied explicitly, or set at random. The map can hold an unlimited number...-Muller incompatibility loci. Multiple haploid or diploid pairs of incom...2833 days ago
- ...mputational methods are available and are widely applied to detect numerical copy...iated chromosomal breaks and identify genes that appear non-randomly affected by...romosomal CNA-associated breaks by a genome-wide approach, which can be applied t...
2214 days ago
- AccNET is a Perl application that presents a new way to study the accessory genome of a given se...phylogenetic and functional information in a network improving the analysis capability. Networks offer a new...
2827 days ago
- ...deep sequencing data. In its present implementation MIRO is especially adapted for the analysis of reads...llumina sequencing platform. MIRO allows to preprocess the Solexa-reads, map them flexibly to several refe...
2830 days ago
- BBMAP • a solution for everything Tha...There are common options for most BBMap suite programs and depending...automatically chosen/set. Using BBMap Mapping Nanopore reads BBMa...tps://www.biostarhandbook.com/tools/bbmap/bbmap-help.html
2824 days ago
- ...ts to use older, long-read technologies. Phymm, a new classification approach for metagenomics data w...short as 100 bp. Its accuracy for short reads represents a significant leap forward over previous composi...
2824 days ago
