AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference ma...2353 days ago
2349 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
Integration of the Ra assembler - a de novo DNA assembler for third generation sequencing data developed on Faculty of Electric...2348 days ago
Seal: SEquence ALignment evaluation suite
Seal is a comprehensive sequencing simulation and alignment tool evaluation suite. This software (implem...ons in the genome based on input parameters of read length, coverage, sequencing error rate, and indel rate....2341 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data. Input Jabba takes as input a concatenated de Bruijn graph and a set of sequences:...2009 days ago
LRCstats: Long Read Correction Statistics
...long reads outputted by third generation sequencing technology such as mach.... The reads produced by third generation sequencing technology, as the name sugge...ate, short reads outputted by next generation sequencing technologies to correct long...2339 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query fe...oadmap Epigenomics, and GTEx by facilitating data integration and hypothesis generation...2334 days ago
mojolicious: a next generation web framework for the Perl programming language.
Back in the early days of the web, many people learned Perl because of a wonderful Perl library called CGI. It was simple enough to get started without knowing much...2332 days ago
2311 days ago
UCSC SARS-CoV-2 Genome Browser
The UCSC SARS-CoV-2 Genome Browser (https://genome.ucsc.edu/covid19.html) is an adaptat...cluding conservation with similar viruses, immune epitopes, RT–PCR and sequencing primers and CRISPR guides. We...877 days ago