MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tai...e analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the in...fiers (one per line) or by using the gene ID search tool or with...2343 days ago
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HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper:...2334 days ago
GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bio...genometools” which consists of several modules. If you are interested in gene prediction, have a look at&nb...2334 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results....2332 days ago
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ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
ETE v3, featuring numerous improvements in the underlying library of meth...one tools to perform common tasks in comparative genomics and phylogenetics. The new features include (i) building gene-based and supermatrix-based p...2322 days ago
Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these resources and suggests the following compressed FASTA file to be used as hg38/GRCh38 huma...1593 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
REGEN infers evolutionary events, including gene creation and deletion and replicon fission a...um parsimony or a maximum likelihood method. Gene content reconstruction is based on the concept of neighboring gene pairs. REGEN was designed to...2307 days ago