Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAfterQC can simply go thro...ers: good, bad and QC folders, which contains good reads, bad reads a...2417 days ago
2410 days ago
2410 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detecti...he kelp Saccharina japonica. Analyses were based on multiple blastn searches with short s...2407 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016 (European eel) TULIP cu...e likely to follow. Tulipseed takes as input alignments files of long reads to sparse short s...2407 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs using racon (optional). Map a paired-end Illumina dataset onto t...2407 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based&nb...nbsp;assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap...ontigs from raw PacBio or ONT reads without error correction. It al...m are ultrafast tools for (i) mapping and (ii) assembly. Designed f...2403 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predic...ier, RITA is able to achieve very high accuracy on short reads....2403 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wik...nbsp;). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads.A...2403 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2403 days ago