2308 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary biology, designed to help biologists organize and analyze comparative data about or...2297 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to join...enome repeats. The previous standard for evaluation (Hunt et al., Genome Biology, 2014... https://github.com/mandricigor/repeat-aware...2288 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012...Uppsala2016 November - Uppsala2017 November - Uppsala Introduction to Bioinfo...2262 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop...erving all phasing paths from reads and paired-end reads, while also...achieves both transcripts parsimony and coverage deviation minimizati...). It is available at both the bioinformatics chat and&nbs...2241 days ago
MIX: Combining multiple assemblies from NGS data
...relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishin...resent extremities of contigs and edges represent existing alig...The Mix algorithm, approach and results were published in BMC bioinfo...2241 days ago
Jvarkit : Java utilities for Bioinformatics
Collection of Java tool kits for bioinformatics works: Jvarkit : Java utilities for Bioinformatics2209 days ago
2207 days ago
2234 days ago
LAMSA: fast split read alignment with long approximate matches
LAMSA (Long Approximate Matches-based Split Aligner) is a novel...ent approach with faster speed and good ability of handling SV events. It is well-sui...into relatively long fragments and co-linearly align them to sol...d split alignment approach to handle the lar...loped by Yan Gao in Center for Bioinfo...2234 days ago