CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, that...ts a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (...2047 days ago
2047 days ago
Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each posit...embly. This allows for easy filtering of low quality sites for any downstream analysis. https://github.com/gwct/ref...2036 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display statistics of large sequence files...from this SAMStat can be used to verify individual processing steps in large analysis pipelines....2031 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix s...ectly. Or you could send us the genome sequence by email. Then we will do the analysis work for you. https://academ...2027 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
Given the potential relevance of efficient haplotyping in several analysis pipelines, we have designed and engineered pWhatsHap, a parallel, high-performance version of WhatsHap. pWhatsH...2026 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted...2003 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clusteri...lows the study of very large datasets. SiLiX is already included in the analysis pipeline for HOGENOM.1998 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly efficient tools to calculate functional properties in netwo...1997 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
Some parts of a genome may have a very high degree of heterozygosity. This causes contig...n as a contig and an associated haplotig. This can be an issue for downstream analysis whether you're working on the...1994 days ago