1603 days ago
alien_index : identify potential contaminants or horizontally transferred genes in transcriptomes.
identify potential contaminants or horizontally transferred genes in transcriptomes. algorithm is based on al...ithm described in the following: Gladyshev, Eugene A., Matthew Meselson, and Irina R. Arkhipova. "Massive horizontal gene tran...1598 days ago
1589 days ago
PANEV: an R package for a pathway-based network visualization
PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes wi...ps to interpret functional profiles of a cluster of gene...1591 days ago
1571 days ago
1564 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantificati...requirements. ProteoClade helps you analyze two general..., a user's guide, and examples. https://journals.plos.org/ploscompbiol/article?id=10.1371/jo...1553 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
Dahak is a software suite that integrates state-of-the-art open source tools for metagenomic an...ing, metagenome assembly, taxonomic and functional classification, genome binning, and gene...1531 days ago
1528 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice...aterial to train and to assess the prediction accuracy of computational approaches for gene...1467 days ago