2268 days ago
Flye: Fast and accurate de novo assembler for single molecule sequencing reads
Flye is a de novo assembler for long and noisy reads, such as those produced by Pa.... After the initial assembly, Flye performs an extra repeat classification and analysis step to improve the structura...2253 days ago
MIX: Combining multiple assemblies from NGS data
Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome...2249 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for t...haplotypes by gold standard (long) reads ranbow phylo: for the phylogenetic analysis...2225 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
Gblocks eliminates poorly aligned positions and divergent regions of a DNA or protein alignment so that it becomes more suitable for phylogenetic analysis. This server implements the m...2224 days ago
EAGLER: a scaffolding tool for long reads.
EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genome created by any NGS assembler and a set of long r...reads are used to extend the contigs present in the NGS draf...2222 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a c...nstructing a "full length" sequence for functional analysis, or at least to obtain neighb...gment for SNP discovery and linkage disequilibrium analysis. The confidence of assembling...2215 days ago
2214 days ago
HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies
HapCUT2 is a maximum-likelihood-based tool for assembling haplotypes from DNA sequence reads, designed to "just...uracy across diverse sequencing technologies, including but not limited to: NGS shor...2242 days ago
bpRNA: large-scale automated annotation and analysis of RNA secondary structure
bpRNA, a novel annotation tool capable of parsing RNA structures, including comple...ten in perl and requires the Graph perl module. Several additional scripts for analysis are included. The source code...2234 days ago