Genome in a Bottle (GIAB) Consortium
...e Genome in a Bottle (GIAB) Consortium is a public-private-academic consortium hosted by NIST to develop the technical infrastructure (reference standards, reference methods, and reference data)...1604 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
Welcome to kevlar, software for predicting de novo genetic variants without mapping reads to a reference genome! kevlar's k-mer abundance based method calls single...1602 days ago
Π-cyc: A Reference-free SNP Discovery Application using Parallel Graph Search
Reference free SNP search for comparative population genomics: multiple samples run simultanously. **experimental phase, compiles and runs with OpenMPI-1.8.8 with Intel...1602 days ago
mutatrix: a population genome simulator which generates simulated genomes.
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms More at https://github.com/ekg/mutatrix ./mutatrix -S sample -P test/ -p 2 -n 10 reference.fasta1602 days ago
1591 days ago
CLARK: Fast, accurate and versatile sequence classification system
...erial genomes, and (2) the assignment of BAC clones and transcript to chromosome arms/centromeres (in the absence of a finished assembly for the reference genome), CLARK outperforms in...1584 days ago
SvABA: Structural variation and indel detection by local assembly
...is can be customized to any set of reads at the command line using VariantBam rules. These contigs are then immediately aligned to the reference with BWA-MEM and parsed to id...1560 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...ving Patient-Derived Xenografts (PDXs) or host-pathogen interactions. Reference protein sequence databases ar...h taxonomic complexity. Mass spectra are analyzed in the absence of a reference database (ex: using PEAKS, Pe...1551 days ago
CSAR-web: a web server of contig scaffolding using algebraic rearrangements
...he contigs of a target draft genome based on a complete or incomplete reference genome from a related organis...ly scaffold their draft genomes according to a complete or incomplete reference genome.1529 days ago
1526 days ago