funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes...over time to accomodate larger genomes. The impetus for this software package was to be able to acc...2107 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too many tra...roduce way too many assemblies on a good RNA data set, with several methods and several parameter settings.2095 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-based approach where additional cDNA/E...2093 days ago
2071 days ago
vcfR: a package to manipulate and visualize VCF data in R
VcfR is an R package intended to allow easy manipulation and visualization of variant ca...fR provides a link between VCF data and the R environment connecting familiar software with genomic data.2071 days ago
QUAST-LG: Versatile genome assembly evaluation
QUAST-LG-a tool that compares large genomic de novo assemblies against reference sequenc...the finished reference. AVAILABILITY AND IMPLEMENTATION: http://cab.spbu.ru/software/quast-lg2071 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
Allows automatic annotation of metazoan mitochondrial genomes. MITOS is a pipeline desig...to compute a consistent de novo annotation of the mitogenomic sequences. The software allows for a systematic error...2070 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide i...2051 days ago
2025 days ago
2024 days ago