Results for "TE"
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...utadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-thro...ng your data in this way is often required: Reads from small-R...even colorspace data is supported. If you want, you can also j...2941 days ago
- ...at can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is 1.2.4. To cite...T, “Efficient de novo assembly of highly heterozygous genomes from whole-ge...
2941 days ago
- ...ng the evolutionary distance between closely related genomes. These distances can...big sets of genomes. Because andi does not compute full alignments, it is so eff...the impatient to get andi up and running. For extensive instructions please cons...
2941 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps o...ation of features, such as protein coding genes, non-coding ge...since it will automatically detect ambiguous mappings. Satsum...nloaded from the Broad Institute's web site. An incomplete li...2941 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2932 days ago
RCircos: an R package for Circos 2D track plots
...flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processing...sample genomic research data. It can also serve as a base tool to generate complex Circos images. More...2934 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...niquely among current mapping tools, MOSAIK can align reads generated by all the major sequencing technologies, including Illumina...rovide consistent mappings for all the generated data (sequencing technologies, low-coverage and e...2934 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2934 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2932 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
...ipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailin...Bpipe has been published in Bioinformatics! If you use Bpipe, please cite: Sadedin S, Pope B & Osh...2933 days ago
