Referee: Genome assembly quality scores
...gram to calculate a quality score for every position in a genome assembly. This allows for easy filtering of low quality sites for any downstream analysis. https://github.com/gwct/ref...2056 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
...remaining linker and adaptor sequences, causing poor mapping. Apart from this SAMStat can be used to verify individual processing steps in large analysis pipelines....2051 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
...cleotide identity (ANI), you could download and run this program directly. Or you could send us the genome sequence by email. Then we will do the analysis work for you. https://academ...2046 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
Given the potential relevance of efficient haplotyping in several analysis pipelines, we have designed and engineered pWhatsHap, a parallel, high-performance version of Wha...2046 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted...2023 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...e in this package and has been proved to be scalable, so that its allows the study of very large datasets. SiLiX is already included in the analysis pipeline for HOGENOM.2018 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we present a series of highly efficient tools to calculate functional properties in netwo...2016 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
...f the genome to be assembled as separate primary contigs, rather than as a contig and an associated haplotig. This can be an issue for downstream analysis whether you're working on the...2013 days ago
2013 days ago
Biotite: A general framework for computational biology
...sequence and structure modules serve for the analysis of sequence and structural data analysis respectively, database&n...ce and structure data and supports various file formats and analysis and manipulation functions.2013 days ago