Results for "genome structure"
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MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communit...ex microbial communities, or metagenome binning, enables the study of...re we developed an automated metagenome binning software, called Meta...4 human gut samples formed 1,634 genome bi...2672 days ago
- ...@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requireme...least one machine when aligning mammal-sized genomes; less memory is needed for s...ols (ex hal2maf) in the submodules/ directory structure, first source progressiv...
2720 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing fo...ch analyses are often based on whole-genome alignments to elucidate struc...mputational tools that can visualize genome alignments in a meaningful ma...oinformatics/article/28/12/i7/268598/GenomeRin...2718 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best al...for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.wu...
2717 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D...Garrison, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome an...
2717 days ago
- Harvest is a suite of core-genome alignment and visualization tools for q...thousands of intraspecific microbial genomes, including variant calls, re...rees. Tools Parsnp - Core-genome alignment and analysis Gingr...AM. The Harvest suite for rapid core-genome al...
2705 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constructio...l exons against all exons in other genomes and record significant align...t have exons in all or most of the genomes),...
2700 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number o...phism data; (iv) visualizing sliding window results integrated with available genome an...2700 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...running ChromoPainter and FineSTRUCTURE for population inference. A G...from the Downloads page. FineSTRUCTURE R scripts, a facility for exp...the results of ADMIXTURE and STRUCTURE-like mixture models. RADpain...ot a facility to analyse your genome. Sorry if you were misled by the...2693 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Geno...MAF) is being widley accepted and used to store variants detected. The Cancer Genome At...
2689 days ago
