SEX-DETector: A Probabilistic Approach to Study Sex Chromosomes in Non-Model Organisms
SEX-DETector is a probabilistic method that relies on RNA...be used for the assembly and for the mapping of the reads. A full documentation on the...ere. We recommend BWA for mapping of the reads. When the mapping has been p...2219 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the...ranbow eval: for evaluating of the assemble haplotypes by gold standard (long) reads ranbow phylo: for the phylo...2217 days ago
EAGLER: a scaffolding tool for long reads.
EAGLER is a scaffolding tool for long reads. The scaffolder takes as input a draft genome...reated by any NGS assembler and a set of long reads. The long reads are used to e...GLER supports both PacBio and Oxford Nanopore reads. The tool should be compatib...2214 days ago
2213 days ago
Cerulean: A hybrid assembly using high throughput short and long reads
Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads....id assembly using high throughput short and long reads. arXiv preprint arXiv:1307.79...2213 days ago
HALC: High throughput algorithm for long read error correction
HALC, a high throughput algorithm for long read error correction. HALC aligns the long reads to short read contigs from th...aining comparable accuracy. The HALC corrected long reads can thus result in 11.4-60.7%...2210 days ago
PRICE (Paired-Read Iterative Contig Extension), a de novo genome assembler implemented in C++.
We are pleased to release PRICE (Paired-Read Iterative Contig Extensio...of existing contigs. Initially, those contigs can be individual reads from a subset of the paired-read dataset, non-paired reads from sequencing technologies...2207 days ago
npScarf: real-time scaffolder using SPAdes contigs and Nanopore sequencing reads
npScarf (jsa.np.npscarf) is a program that connect contigs from a draft genomes to generate sequences that are closer to finish. These pipelines can run on a single la...2207 days ago
2207 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder, a fast and accurate tool using paired-end RNA-sequencing reads to scaffold genomes. This tool aim...2206 days ago