HTTDB - Horizontally transferred transposable elements database
...ion events which is characterized by the stable integration a viral genomic fragment into the host genome. https://www.ncbi.nlm.nih.gov/pubmed/293153582357 days ago
2354 days ago
HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution
...ptimal Repeat Resolution" Preprint: http://biorxiv.org/content/early/2016/08/01/062117 Paper: http://genome.cshlp.org/content/27/5/747.full An ipython note...2342 days ago
Genome assembly stats plotting
...ed b y a number of metrics, including: Overall assembly length Number of scaffolds/contigs Length of longest scaffold/contig Scaffold/contig N50 and N90Assembly base composi...2321 days ago
ARCS: scaffolding genome drafts with linked reads
...ontiguous assemblies. We show how the contiguity of an ABySS H.sapiensgenome assembly can be increased over six-fold, using moderate coverage (25-fold) Chromium data. We expec...2314 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
...Metazoa. Here, we propose Alienness, a taxonomy-aware web application available at http://alienness.sophia.inra.fr http://www.mdpi.com/2073-4425/8/10/2482309 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
Genome scaffolding is a classical challenging problem in bioinformatics. It refers to joining assembly contigs into chains (called scaffolds). The join between two c...2299 days ago
Carefully opt for human reference genome
...h38 human reference genome. if you map reads to GRCh38 or hg38, use the following: ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_...1601 days ago
d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.
Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The d3Network package makes it easy to cre...2284 days ago
G-compass: a comparative genome browser
G-compass (http://www.h-invitational.jp/g-compass/) is a comparative genome browser. It visualizes evolutionarily conserved genomic regions between human and other 1...2278 days ago