Referee: Genome assembly quality scores
Modern genome sequencing technologies provide a succint measure of quality at each posit...embly. This allows for easy filtering of low quality sites for any downstream analysis. https://github.com/gwct/ref...2037 days ago
AMStat: display statistics of large sequence files from next generation sequencing projects
SAMStat is an efficient C program to quickly display statistics of large sequence files...from this SAMStat can be used to verify individual processing steps in large analysis pipelines....2032 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix s...ectly. Or you could send us the genome sequence by email. Then we will do the analysis work for you. https://academ...2027 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
Given the potential relevance of efficient haplotyping in several analysis pipelines, we have designed and engineered pWhatsHap, a parallel, high-performance version of WhatsHap. pWhatsH...2027 days ago
GWASpro: A High-Performance Genome-Wide Association Analysis Server
GWASpro supports building complex design matrices, by which complex experimental designs that may include replications, treatments, locations and times, can be accounted...2004 days ago
1999 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clusteri...lows the study of very large datasets. SiLiX is already included in the analysis pipeline for HOGENOM.1999 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) packa...highly efficient tools to calculate functional properties in networks based...terization across even thousands of functional groups to be accomplished in...ss candidates genes across multiple function...1997 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
Some parts of a genome may have a very high degree of heterozygosity. This causes contig...n as a contig and an associated haplotig. This can be an issue for downstream analysis whether you're working on the...1994 days ago
1993 days ago