Results for "Genome Biology"
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Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a mi...ery vanilla C). It can analyze an entire microbial genome in 30 seconds or less. Accur...ndifferent: Prodigal performs well even in high GC genomes...2742 days ago
- MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communit...ex microbial communities, or metagenome binning, enables the study of...re we developed an automated metagenome binning software, called Meta...4 human gut samples formed 1,634 genome...
2675 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2...150GB+ of memory on at least one machine when aligning mammal-sized genomes...
2723 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing fo...ch analyses are often based on whole-genome alignments to elucidate struc...mputational tools that can visualize genome alignments in a meaningful ma...oinformatics/article/28/12/i7/268598/GenomeR...2722 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best ali...for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome....
2720 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D B...Garrison, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome...
2720 days ago
- ...ds of intraspecific microbial genomes, including variant calls, re...Tools Parsnp - Core-genome alignment and analysis Gingr...Harvest suite for rapid core-genome alignment and visualization o...fic microbial genomes. Genome Biology, 15 (11), 1-15 [PDF]...
2709 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constructio...l exons against all exons in other genomes and record significant align...t have exons in all or most of the genomes...
2703 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of...rphism data; (iv) visualizing sliding window results integrated with available genome...2703 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTUR...for methodology for Chromosome Painting. It is not a facility to analyse your genome....2696 days ago
