Results for "genome assembly"
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v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements git gcc 4.2 or newer python 2...150GB+ of memory on at least one machine when aligning mammal-sized genomes;...2704 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing fo...ch analyses are often based on whole-genome alignments to elucidate struc...mputational tools that can visualize genome alignments in a meaningful ma...oinformatics/article/28/12/i7/268598/GenomeRi...2703 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at finding the single best ali...for download from http://faculty.virginia.edu/irahall/YAHA. Contact: http://genome.w...
2701 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D...Garrison, G T Marth, A R Quinlan, and I M Hall. SpeedSeq: ultra-fast personal genome a...
2701 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for er...nd zinc finger binding residues), they can be removed from the sequence during assembly. The final sequence will corr...
2698 days ago
- Harvest is a suite of core-genome alignment and visualization tools for qu...thousands of intraspecific microbial genomes, including variant calls, re...trees. Tools Parsnp - Core-genome alignment and analysis Gingr...AM. The Harvest suite for rapid core-genome a...
2690 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map constructio...l exons against all exons in other genomes and record significant align...t have exons in all or most of the genomes)...
2684 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of...rphism data; (iv) visualizing sliding window results integrated with available genome a...2684 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTUR...for methodology for Chromosome Painting. It is not a facility to analyse your genome....2677 days ago
- maftools - An R package to summarize, analyze and visualize MAF files. Introduction. With advances in Cancer Genom...(MAF) is being widley accepted and used to store variants detected. The Cancer Genome A...
2674 days ago
