NanoPack: visualizing and processing long-read sequencing data
The NanoPack tools are written in Python3 and released under the GNU GPL3.0 License. The source code can be found at https://github.com/wdecoster/nanopack, togeth...2149 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2144 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using P...Illumina Paired-end RNA-sequencing reads from target speciesies. Our method provid...this method is to improve the completeness of gene regions and long-coding gene regions (for instance, c...2122 days ago
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GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a similarity-bas...ional cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignm...2095 days ago
BioGPS: Spotlight on the Gene Expression Atlas
BioGPS opened 2016 with a publication in Nucleic Acids Research, right after the New Year holiday. Throughout the year, new designs for the site were being created, re...2081 days ago
KOBAS: a web server for gene/protein functional annotation and functional gene set enrichment
KOBAS 3.0 is a web server for gene/protein functional annotation (Annotate module) and functional gene set enrichment(Enrichment mod...). For Annotate module, it accepts gene list as input, including IDs...ases about pathways, diseases, and Gene Ontology. For Enrichment modu...2080 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a...ysis of colinear syntenic blocks (CSBs) - groups of genes that are consistently locate...score and clustered to families according to their gene content similarity....2074 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
Allows automatic annotation of metazoan mitochondrial genomes. MITOS is a pipeline...he software allows for a systematic error screening, the standardisation of gene name and gene boundary designation, anticod...2073 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features...r, and labels, which are specified in a config file generated by the first run of Syni...ly edited. Synima runs quickly on a command line to generate informative and publicati...2069 days ago