Results for "AP"
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quickmerge uses a simple concept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes. The program uses informati...2754 days ago
- ...sfying cut-offs (--identity and --overlap) suboptimal matches (only be...h query to reference is kept) and removing overlapping matches on reference....experimental implementation! Consider closing gaps after scaffolding....
2754 days ago
- If genomes were completely random sequences in a statistical sense, 'overlap-consensus-layout' method woul...en have long repetitive regions, and they are hard to assemble using overlap-consensus-layout approach. De...
2753 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...nsights into the underlying data. Such visualizations typically are either realized in a linear fashion as in genome browsers or by using a circular approach, where relationships be...2724 days ago
- ...se simple heuristics to select alignments, YAHA uses a directed acyclic graph to find the optimal set of a...biologically relevant breakpoint penalty. YAHA can also report multiple mappings per defined segment of t...
2722 days ago
- A flexible framework for rapid genome analysis and interpretation C Chiang, R M Layer, G G Faust, M R Lindberg, D B Rose, E P Garrison, G T Marth, A R Quinlan, and I M Hall. Spee...
2722 days ago
- ...ence will correct any uncalled bases in the overlapping region using the complementary strand. When mismatches occur in the overlapping region, the base with the...ied modules. http://neufeldserver.uwaterloo.ca/~apmasell/pandaseq_man1.html
2719 days ago
Many-Core Engine (MCE) for Perl example
...MCE. MCE::Core Provides the Core API for Many-Core Engine. The va.... MCE::Mutex Provides a simple semaphore implementation supporting...el flow model for building creative applications. This makes use of...:Shared provides data sharing capabilities for MCE. It inc...2711 days ago
iTOL: interactive Tree Of Life
...rcular tree layout, which makes it easy to visualize mid-sized tree (up to several thousand leaves). Trees can be exported to several graphical formats, both bitmap and vector based. There are...2711 days ago
- ...s and variants HarvestTools - Archiving and postprocessing Citation Treangen TJ, Ondov BD, Koren S, Phillippy AM. The Harvest suite for rapid core-genome alignment and v...
2711 days ago
