Results for "B"
Bookmarks
YASS :: genomic similarity search tool
...al alignment tools for DNA sequences (FASTA, BLAST, PATTERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS u...eats, as non-coding DNA/RNA. Another simple, but interesting feature is that...E-value evaluated according to the sequence background frequencies paramet...2989 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s...With devtools, developing a package becomes so easy that it will be...iting a significant amount of code. Before you get started be sure...repository – https://github.com/hadley/devtools 2988 days ago
- ...gh performance computing. This page is a HOWTO guide for setting up a SLURM installation, currently focused on a CentOS 7 Linux OS. Please send feedback to Ole.H.Nielsen /at/ fysi...
2987 days ago
- ...quencing contain the 3’ sequencing adapter because the read is longer than...are useful for pulling out RNA from your sample, but often you don’t want...extensive suite of automated tests and is available under the terms of the MIT...
2978 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequ...moto K, Noguchi H, Toyoda A, Ogura Y, Okuno M, Yabana M, Harada M, Nagayasu E, M...Hayashi T, Itoh T, “Efficient de novo assembly of highly heterozygous geno...
2978 days ago
- ...or estimating the evolutionary distance between closely related genomes. These distances can be used to rapidly infer phylog...that it scales even up to thousands of bacterial genomes. This readme...nsult the manual. More at https://github.com/evolbioinf/andi/
2978 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...such as repeat masking, since it will automatically detect ambiguous mappings. Satsuma has parallelization built-in and is designed to run...lly been asked by our users! Please feel free to add your own by e-mailing us) is here. If y...2978 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2968 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Gener...equencing (NGS) experiments. Hagfish builds on the concept of covera...ongst others) in quality control of de novo genome assembl...requires a reference sequence and a paired end re-sequenci...2970 days ago
RCircos: an R package for Circos 2D track plots
RCircos package provides a simple and flexible way to make Circos 2D track plots with R and could be easily integrated into other R data processin...multi-sample genomic research data. It can also serve as a base tool to generate complex C...2970 days ago
