GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure p...edictions are calculated using a similarity-based approach where additional cDNA/EST and/or...2095 days ago
2086 days ago
2053 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and OrthoANI are comparable algorithm...ies demarcation cut-off at 95~96% and large comparison studies have...f interest without unfamiliar Command Line Envi...an be integrated into preexisting bioinfo...2025 days ago
2021 days ago
2020 days ago
Biotite: A general framework for computational biology
...the beginners in programming and computationally efficient because...f the implementation of Numpy and Cython. Biotite consists...r databases such as RCSB PDB, and application provides interfac...kage bundles popular tasks in computational biology into an unifying framework, w...2020 days ago
2006 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) fro...hidden Markov model algorithm and a calling method that classif...e EXCAVATOR on three datasets and compare the results with thre...has been published on Genome Biology (http://genomebiology.com/2013/14/10/R120/abstract)...2002 days ago
Osprey: Network Visualization System
...ped by the TyersLab and is a part of the BioGRID...utilizes both MySQL and Java to operate and...Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed] and supported by the National In...1986 days ago