BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
With BioJupies you can produce in seconds a customized, reusable, and interactive report from your own raw or processed RNA-seq data through a simple user interface Bio...1284 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because of...models, Hidden Markov models, and Bayesian networks) for biological sequence analysis and systems biology. Other ma...1639 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so i...variances from the data). By "cohort" we mean samples sequenced with the same enrichme...1622 days ago
modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the explanation of machine learning predicti...tions. Tools for model exploration unite with tools for EDA (Exploratory Data Analysis) to give a broad overview of...1616 days ago
1614 days ago
Tadpole: an assembler, error-corrector, and read-extender
Tadpole is a kmer-based assembler, with additional capabilities of error-correcting and extending reads. It does not do any complicated graph analysis or scaffolding, and therefore...1603 days ago
MEC: Contig Misassembly Correction
MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment cover...sassemblies based on the distribution of paired-end reads and the statistical analysis of GC-contents. We apply MEC...1603 days ago
1600 days ago
Sequanix: a dynamic graphical interface for Snakemake workflows
A Python library dedicated to NGS analysis (e.g., tools to visualise standard NGS formats). A set of pipelines dedicated to NGS in the form of Snakefiles (Makefile-like with Python syn...1596 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four s...1596 days ago