ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo assemblie...r. Reducing/removing reference bias as compared to mapping based approaches. The software is...2138 days ago
2112 days ago
P_RNA_scaffolder: a fast and accurate genome scaffolder using paired-end RNA-sequencing reads
P_RNA_scaffolder is a novel scaffolding tool using Pair-end RNA-seq to scaf...genome fragments. The method is suitable for most genomes. The program cou...oaches or other Protein-based approaches (for in...ene regions and long-coding gene regions (for instanc...2096 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annot...r time to accomodate larger genomes. The impetus for this softwa...able to accurately and easily annotate a genome for submiss...2084 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
Quality assessment of this mRNA Transcript Assembly Software is described in EvidentialGene_quality. Too many transcript assemblies is much better than too few. It allows one...2071 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene stru...imitations in GeneSeqer, a popular gene prediction program which is widely used for plant g...2069 days ago
2048 days ago
vcfR: a package to manipulate and visualize VCF data in R
VcfR is an R package intended to allow easy manipulation and visualization of variant call format (VCF) data. Functions are provided to rapi...function extracts matrices from the VCF data for us...ata and the R environment connecting familiar software wi...2047 days ago
QUAST-LG: Versatile genome assembly evaluation
QUAST-LG-a tool that compares large genomic de novo assemblies against reference sequence...regions, we introduce a concept of upper bound assembly for a.... AVAILABILITY AND IMPLEMENTATION: http://cab.spbu.ru/software/qu...2047 days ago
MITOS: improved de novo metazoan mitochondrial genome annotation
Allows automatic annotation of metazoan mitochondrial genomes. MITOS is a pipeline desi...de novo annotation of the mitogenomic sequences. The software allows for a...anticodon labelling of tRNAs, and provides the means for the ass...2046 days ago